How to Use a Microscope

Do you need help learning how to effectively use a compound microscope?

Believe it or not, but it’s not as complicated as it may look! We’re confident that these instructions will help you become comfortable and proficient with your microscope.

How to Use Your Compound Microscope

Step 1: Set your microscope on a tabletop or other flat, sturdy surface where you will have plenty of room to work. Plug the microscope’s power cord into an outlet. (Note: some compound microscopes don’t use electric lighting but have a mirror to focus natural light instead.) Switch on your microscope’s light source and then adjust the diaphragm to the largest hole diameter, allowing the greatest amount of light through. If you have an iris diaphragm, slide the lever till the most light comes through. See the diagram below for help locating these parts.

Step 2: Rotate the nosepiece to the lowest-power objective (usually 4x for 40x magnification). It is easiest to scan a slide at a low setting, since you have a wider field of view at low power.

Step 3: Place a microscope slide on the stage, either under the stage clips or clipped onto the mechanical stage if your microscope has one. A prepared slide works best when you do this for the first time. (If you do not have a prepared slide, place a strand of colored yarn or thread on a blank slide and place a coverslip over it.) Move the slide until the specimen is under the objective lens.

Step 4: Adjust the large coarse focus knob until the specimen is in focus. Slowly move the slide to center the specimen under the lens, if necessary. Do this by gently nudging it with your fingers or turning the slide control knobs if you have a mechanical stage.

Step 5: Adjust the small fine focus knob until the specimen is clearly in focus. Then adjust the diaphragm to get the best lighting. Start with the most light and gradually lessen it until the specimen image has clear, sharp contrast. (Note: Some microscopes have only one focus knob, for “intermediate” focus.)

Step 6: Scan the slide (right to left and top to bottom) at low power to get an overview of the specimen. Then, center the part of the specimen you want to view at higher power. Rotate the nosepiece to the 10x objective for 100x magnification. Refocus and view your specimen carefully.

Step 7: Adjust the lighting again until the image is clear (you will need more light for higher power). Repeat with the 40x objective for 400x magnification, which will enable you to see the specimen detail necessary for high school biology lab work.

  • Optional: If your microscope has a 100x oil-immersion lens, you’ll need to put 1-2 drops of immersion oil over the slide coverslip (the piece of glass over the middle of the slide) before viewing it at the highest power. Move the 100x objective lens into position, then slowly raise the stage until the lens contacts the oil. Continue focusing with the coarse focus knob until the specimen appears in focus or shows of blurred outline. Finish focusing with the fine focus knob. With the 100x lens, you will be able to see additional cell detail, but you will need to take extra care with focus and contrast for a clear image. When you’re done using the slide, clean the oil off of the slide and the lens with lens cleaning paper and solution. Once you’ve mastered the basics of using your microscope, you can expand your microscope studies. Print copies of our Microscope Observation worksheet to help you record what you see

Diagram of Microscope Parts

parts of a microscope

Microscope Cleaning and Maintenance

To clean the exterior side of lenses, use a non-solvent cleaning solution designed for cleaning optics or eyeglasses. First, remove dust with a soft brush or a can of compressed air. Then moisten a piece of lint-free, dry tissue or lens paper, and clean the lens surfaces with a circular motion. Repeat with a second piece of paper moistened with lens solution if necessary. Repeat once again with dry lens paper until the lens is clean and dry. Use this same procedure for the eyepiece and objective lenses.

To clean the interior side of the lenses, DO NOT use the procedure above. Instead, use a bulb-type duster or a compressed gas canister designed specifically for cameras/microscope cameras, and other optical equipment. Only use a microfiber cloth. Order our Microscope Cleaning Kit for a complete set of tools to clean your microscope with. To clean the body of the microscope, use a soft, dry, or damp cloth. Using a dust cover will help keep your microscope investment clean and dust-free.

More Information

Whether you’re interested in anatomy, zoology, or botany, or want a starter set, secure an affordable set of prepared slides.

Check out our tips for making slides and doing other activities with your microscope.

Teaching Homeschool

Welcome! After you finish this article, we invite you to read other articles to assist you in teaching science at home on the Resource Center, which consists of hundreds of free science articles!

Shop for Science Supplies!

Home Science Tools offers a wide variety of science products and kits. Find affordable beakers, dissection supplies, chemicals, microscopes, and everything else you need to teach science for all ages!

Related Articles

Guiding Thinking, Not Managing Chaos 

Guiding Thinking, Not Managing Chaos 

How One Extended Learning Program Transformed What Science Instruction Looks Like  Home Science Tools | Summer of Success Series  There is a version of after-school science that most programs know well: a facilitator who is doing their best, working from a...

When After-School Science Works: Lessons from the Field

When After-School Science Works: Lessons from the Field

Home Science Tools | Summer of Success Series Out-of-school time programs occupy a position in a student's educational life that is genuinely different from the regular school day — not supplementary to it, but distinct from it in ways that matter for how...

Building a Strong Earth Science Curriculum for Homeschool Learning

Building a Strong Earth Science Curriculum for Homeschool Learning

A well-structured Earth Science Curriculum plays an essential role in helping students understand the natural world. The homeschool setting provides a unique chance to investigate scientific principles through direct observation, hands-on experiments, and practical,...

Inspiring Future Scientists with the Power of a Digital Microscope

Inspiring Future Scientists with the Power of a Digital Microscope

The journey of scientific discovery often begins with a single moment of wonder. For children and adolescents, the ability to see the intricate details of a honeybee’s wing or the complex cellular structure of a leaf can spark a lifelong passion for the STEM fields....

Recreating Famous Science Experiments at Home

Recreating Famous Science Experiments at Home

Science history isn’t just something to read about in a textbook; it’s something that should be experienced firsthand. At Home Science Tools, we believe some of the most powerful learning happens when students do science, not just study it. Many of the world’s most...

should I learn computer coding